PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2508_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 256aa    MW: 28195.2 Da    PI: 4.7587
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2508_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.58.2e-1974124155
                                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                          + y+GVr++  +g+Wv+e+r+p   +k++r++lg+f tae+Aa+a++ a+ +l+g
  cra_locus_2508_iso_1_len_1251_ver_3  74 PVYRGVRRRN-SGKWVCEVREP---NKKTRIWLGTFPTAEMAARAHDVAAIALRG 124
                                          68*****888.8******9998...347*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-1474124IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2275134IPR016177DNA-binding domain
PROSITE profilePS5103222.76175132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-3275134IPR001471AP2/ERF domain
SMARTSM003802.5E-3175138IPR001471AP2/ERF domain
CDDcd000186.46E-3276134No hitNo description
PRINTSPR003672.8E-97687IPR001471AP2/ERF domain
PRINTSPR003672.8E-998114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MNFFSRCYSD PLAHATTSDL WNSTDHFQES SSSGSTDGAG NAWKFNYSDE EVLLASNNPK  60
KRAGRKKFRE TRHPVYRGVR RRNSGKWVCE VREPNKKTRI WLGTFPTAEM AARAHDVAAI  120
ALRGRSACLN FADSAWKLQI PTSSDAKDIQ KAAAEAAKAF KPTDATATAT ESELLVGAAD  180
TSTNTNCHDI DAKEEESAQE EEQQEVFFMD EEAVFGMPGL LLNMAEGMML PPPQCAGTVE  240
DDFGSELANN NDVSLW
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00557DAPTransfer from AT5G51990Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011030036.12e-95PREDICTED: dehydration-responsive element-binding protein 1A
SwissprotQ9FJ934e-80DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A0N7BSG36e-99A0A0N7BSG3_COFAR; Dehydration-responsive element-binding protein 1D
STRINGPOPTR_0012s13870.11e-91(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183